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Datasets in the Pancreatic Expression Database

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A set of highly relevant published pancreatic cancer papers was manually processed, data checked and results loaded into a relational database.

The data was annotated and integrated with the available Ensembl human genome annotations including gene related annotations, sequences, SNPs, gene structure, multi-species and antibody data from the human protein atlas.

We will be updating the database on a regular basis with new findings in the pancreatic cancer field. We also welcome and support pancreatic cancer scientists worldwide to deposit and share their data. If you have data that you would like to submit or any other enquiry, please email help@pancreasexpression.org.uk

Comparison Unique Gene Count
ArticleGene Count TechnologyPlatform
Acinar (adjacent to cancer) / Chronic Pancreatitis (CP) (microdissected)19
Fukushima N et al (Jun-05)19Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;qRT-PCR;IHC;
Acinar (adjacent to cancer) / Normal pancreas NP (microdissected)19
Fukushima N et al (Jun-05)19Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;qRT-PCR;IHC;
Adenovirus sensitive / resistant (PaTu8988 cell line)800
Wang Y et al (2009)800Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Ampullary Carcinoma / Normal duodenum190
Van Heek NT et al (Jul-04)190Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;Commercial Array Plattform:U133B Affymetrix GeneChip;
Cell line (CL) / Normal pancreas NP (bulk tissue)199
Logsdon CD et al (May-03)98Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Szafranska et al (2007)101miRNAmiRNA-Array(mirVana miRNA Bioarray (Ambion);
Chronic pancreatitis (CP) / Normal Pancreas (NP) (bulk tissue) (pooled from specimens derived from patients who had benign lesions of the pancreas)120
Chen R et al (Aug-07)120ProteomicsIsotope-code affinity tag (ICAT);Mass Spectrometry;LC MS/MS;
Chronic pancreatitis (CP) / Normal pancreas ND (adjacent to cancer)19
Bloomston M (May-07)19miRNAmiRNA-Array(OSU_CCC version 3.0);
Chronic pancreatitis (CP) / Normal pancreas NP (bulk tissue)996
Crnogorac-Jurcevic T et al (Nov-05)27TranscriptomicsCommercial Western blot: BD PowerBlot;
Esposito I et al (Jan-07)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;
Friess H et al (Jun-03)886Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Li J et al (Apr-05)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;qRT-PCR;in situ hybridization;
Shen J et al (Dec-04)36Proteomics2D-PAGE;Mass Spectrometry;
Szafranska et al (2007)56miRNAmiRNA-Array(mirVana miRNA Bioarray (Ambion);
Erlotinib, cetuximab sensive / resistant (Xenograft from pancreatic cancer patient (ectopic))24
Jimeno A et al (2008)24Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Fine needle aspirates (FNA) / Normal pancreas NP (bulk tissue)28
Crnogorac-Jurcevic T et al (Nov-01)28TranscriptomicsqRT-PCR;cDNA Array;Commercial Array Plattform: Clontech Atlas Cancer Array;
gemcitabine sensitive (L3.6pl, BxPC-3, CFPAC-1, SU86.86) / resistant (PANC-1 Hs766T, AsPC-1, MIAPaCa-2, MPanc96)90
Arumugam T et al (July 15,2009)90Transcriptomicsoligo Array;Commercial Array Plattform:Illumina Human-6v2;
Intraductal papillary mucinous neoplasms (IPMN) / HPDE (ductal cell line)92
Terris B et al (May-02)92TranscriptomicscDNA Array;5K1 slides used contained 5184 elements, Sanger UK;IHC;
Intraductal papillary mucinous neoplasms (IPMN) / Normal pancreas ND (microdissected normal ductal cells)871
Sato A et al (Mar-04)871TranscriptomicsqRT-PCR;oligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;
IPI-504 Treated / untreated (Xenograft from pancreatic cancer patient (ectopic))176
Song D et al (Mar-10)176Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
MTX treated sensitive / resistant (MIAPaCa-2)1519
Selga E et al (2009)1519Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Mucinous cystic neoplasms (MCN) / Normal Ductal (microdissected)28
Fukushima N et al (Dec-04)28Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;qRT-PCR;
Mucinous cystic ovarian type stroma /fibrous stromal cells23
Fukushima N et al (Dec-04)23Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;qRT-PCR;
Normal Pancreas (adjacent to cancer) / Normal pancreas NP (bulk tissue)1
Pogue-Geile KL et al (Dec-06)1TranscriptomicsqRT-PCR;
Normal pancreas ND (microdissected normal ductal cells) / Normal pancreas NP (bulk tissue)1
Esposito I et al (Jan-07)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;
Pancreatic Acinar Cell Carcinoma (PACC) / Normal pancreas NP (bulk tissue)31
Roldo C et al (Oct-06)31miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic adenocarcinoma (PDAC) / Cell line (CL) (bulk tissue)79
Szafranska et al (2007)79miRNAmiRNA-Array(mirVana miRNA Bioarray (Ambion);
Pancreatic adenocarcinoma (PDAC) / Chronic pancreatitis (CP) (bulk tissue)1078
Crnogorac-Jurcevic T et al (Nov-05)99TranscriptomicsCommercial Western blot: BD PowerBlot;
Friess H et al (Jun-03)886Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Logsdon CD et al (May-03)98Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Shen J et al (Dec-04)32Proteomics2D-PAGE;Mass Spectrometry;
Szafranska et al (2007)54miRNAmiRNA-Array(mirVana miRNA Bioarray (Ambion);
Pancreatic adenocarcinoma (PDAC) / Chronic pancreatitis (CP) (microdissected stromal cells)99
Pilarsky C et al (Dec-08)99Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;Commercial Array Plattform:U133B Affymetrix GeneChip;
Pancreatic adenocarcinoma (PDAC) / Chronic pancreatitis (CP) (miscrodissected)18
Bloomston M (May-07)18miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic adenocarcinoma (PDAC) / Healthy donors (Urine)22
Weeks M et al (Jul-08)22Proteomics2-D-DIGE;
Pancreatic adenocarcinoma (PDAC) / ND or HPDE503
Jones S et al (Sep-08)503TranscriptomicsSAGE;
Pancreatic adenocarcinoma (PDAC) / Normal pancreas (normal ductal cells) (both microdissected)1076
Buchloz M et al (Oct-05)497Transcriptomicsoligo Array;Commercial Array Plattform: The Human Genome Oligo-Set-Version 2.0 (Operon, Germany);
Crnogorac-Jurcevic T et al (Jul-02)15TranscriptomicscDNA Array;Commercial Array Plattform: Clontech Atlas Cancer Array;SAGE;
Grutzmann R et al (Sep-04)111Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;Commercial Array Plattform:U133B Affymetrix GeneChip
Nakamura T et al (Mar-04)507TranscriptomicscDNA Array (in house, Human Genome Centre Tokyo);
Pancreatic adenocarcinoma (PDAC) / Normal pancreas ND (adjacent to cancer)26
Bloomston M (May-07)26miRNAmiRNA-Array(OSU_CCC version 3.0);qRT-PCR;
Pancreatic adenocarcinoma (PDAC) / Normal pancreas NP (bulk tissue adjacent to cancer)8
Zhang Y et al (Apr-09)8miRNAqRT-PCR;
Pancreatic adenocarcinoma (PDAC) / Normal pancreas NP (bulk tissue)1514
Badea L et al (2008)246Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Crnogorac-Jurcevic T et al (Nov-05)175TranscriptomicsCommercial Western blot: BD PowerBlot;
Esposito I et al (Jan-07)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;
Friess H et al (Jun-03)886Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Iacobuzio-Donahue CA et al (Apr-02)60Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95 A, B, C, D, and E;
Lee EJ et al (Dec-06)14miRNAqRT-PCR;
Logsdon CD et al (May-03)98Transcriptomicsoligo Array;Commercial Array Plattform:GeneChip HuGeneFL Affymetrix (7000 sequences representing 5600 full-length human genes);
Lu Z et al (Dec-04)95ProteomicsMass Spectrometry;2D-PAGE;MALDI-TOF-MS;
Pei H et al (2009)58Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Pogue-Geile KL et al (Dec-06)1TranscriptomicscDNA Array;Non Commercial Array Plattform;
Segara D et al (May-05)36Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;Commercial Array Plattform:U133B Affymetrix GeneChip;
Shen J et al (Dec-04)36Proteomics2D-PAGE;Mass Spectrometry;
Szafranska et al (2007)74miRNAmiRNA-Array(mirVana miRNA Bioarray (Ambion);
Tan ZJ et al (Apr-03)52TranscriptomicscDNA Array;United Gene technique, Ltd;
Pancreatic adenocarcinoma (PDAC) node-positive with at least 24 months survival/ Pancreatic adenocarcinoma (PDAC) dying of disease within 24 months5
Bloomston M (May-07)5miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic cancer (PC) liver metastasis / Normal Pancreas (NP)2
Esposito I et al (Jan-07)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;IHC;
Li J et al (Apr-05)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;qRT-PCR;in situ hybridization;
Pancreatic Cancer / Normal Pancreas (NP) (bulk tissue)76
Chen R et al (Oct-05)74ProteomicsIsotope-code affinity tag (ICAT);Mass Spectrometry;LC MS/MS;
Esposito I et al (Jan-07)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;
Li J et al (Apr-05)1Transcriptomicsoligo Array;Commercial Array Plattform: Affymetrix HG U95Av2;qRT-PCR;in situ hybridization;
Pancreatic Cancer Cell line PANC-1 / Pancreatic Cancer Cell line SW19908
Zhang H et al (Jul-09)8ProteomicsMass Spectrometry;iTRAQ;LC MS/MS;
Pancreatic Cancer Cell lines (Panc-1, MIA PaCa-2,BxPC-3, Hs766T, ASPC-1, Capan-1, Capan-2, Panc3.27, HPAF-II, PL45) / Human Pancreatic Ductal Epithelium cell line (HPDE)8
Zhang Y et al (Apr-09)8miRNAqRT-PCR;
Pancreatic Cancer Cell lines highly invasive/metastatic (SU86.86;Suit0028;HPAF-II;MPanc96;AsPC-1;PaTu8988S;Suit007) / Pancreatic Cancer Cell lines less invasive/metastatic (Capan-2;PaTu 8902;PaTu8988;PANC-1;BxPC-3;A818;PT45;Capan-1;MIAPaCa-2)58
Mees ST et al (inpress)58miRNATaqMan Low Density Arrays (TLDA) Human MicroRNA Panel 1.0 (Applied Biosytems);
Pancreatic Cancer patients / Benign pancreatic disease (Chronic pancreatitis and pancreatic pseudocyst) (Serum)40
Yu KH et al (Sep-05)40ProteomicsMass Spectrometry;2-D-DIGE;MALDI/TOF/TOF;Western Blot;
Pancreatic Cancer patients / non-cancer healthy donors (Plasma)9
Kakisaka T et al (Jun-07)9ProteomicsMass Spectrometry;2-D-DIGE;LC MS/MS;
Pancreatic cancer/Healthy control (Saliva)34
Zhang L et al (2010)34Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;
Pancreatic cancer/Healthy control (Serum)25
Gnjatic S et al (Mar-10)25ProteomicsELISA;ProtoArray (Invitrogen);
Pancreatic Endocrine Tumors (PETs) (functioning and non-functioning) / Normal pancreas NP (bulk tissue)83
Roldo C et al (Oct-06)83miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (functioning and non-functioning) with liver metastasis / Pancreatic Endocrine Tumors (PETs) (functioning and non-functioning) without liver metastasis1
Roldo C et al (Oct-06)1miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (functioning and non-functioning), High(Ki67>2%) proliferation index/Pancreatic Endocrine Tumors (PETs) (functioning and non-functioning) w/o low(Ki67<=2%) proliferation index1
Roldo C et al (Oct-06)1miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (functioning, insulinomas) / Pancreatic Acinar Cell Carcinoma (PACC)10
Roldo C et al (Oct-06)10miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (functioning, insulinomas) / Pancreatic Endocrine Tumors (PETs) (non-functioning)3
Roldo C et al (Oct-06)3miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (non-functioning) / Islet cells (bulk tissue)192
Maitra A et al (Dec-03)192Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;
Pancreatic Endocrine Tumors (PETs) (non-functioning) with High (Ki67 >2%) proliferation index / Pancreatic Endocrine Tumors (PETs) (non-functioning) without low (Ki67 <=2%) proliferation index1
Roldo C et al (Oct-06)1miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (non-functioning) with liver metastasis / Purified islet cells 1119
Capurso G et al (Jun-06)1119Transcriptomicsoligo Array;Commercial Array Plattform:U133A Affymetrix GeneChip;Commercial Array Plattform:U133B Affymetrix GeneChip;
Pancreatic Endocrine Tumors (PETs) (well-differentiated endocrine tumors carcinoma (WDEC)) / Pancreatic Acinar Cell Carcinoma (PACC)4
Roldo C et al (Oct-06)4miRNAmiRNA-Array(OSU_CCC version 3.0);
Pancreatic Endocrine Tumors (PETs) (well-differentiated endocrine tumors carcinoma (WDEC)), High(Ki67>2%) proliferation index/Pancreatic Endocrine Tumors (PETs)(well-differentiated endocrine tumors carcinoma (WDEC)) w/o low(Ki67<=2%) proliferation index1
Roldo C et al (Oct-06)1miRNAmiRNA-Array(OSU_CCC version 3.0);Northern blot;
Pancreatic intraepithelial neoplasia (PanIN) / Normal pancreas NP (bulk tissue)1
Pogue-Geile KL et al (Dec-06)1TranscriptomicscDNA Array;Non Commercial Array Plattform;
Pancreatic intraepithelial neoplasias (PanIN-1b) / Normal pancreas ND (microdissected normal ductal cells)42
Buchloz M et al (Oct-05)42Transcriptomicsoligo Array;Commercial Array Plattform: The Human Genome Oligo-Set-Version 2.0 (Operon, Germany);
Pancreatic intraepithelial neoplasias (PanIN-1B/2) / Normal pancreas ND (microdissected normal ductal cells)151
Prasad NB et al (Mar-05)151TranscriptomicscDNA Array;Non Commercial Array Plattform;qRT-PCR;
Pancreatic intraepithelial neoplasias (PanIN-2) / Normal pancreas ND (microdissected normal ductal cells)364
Buchloz M et al (Oct-05)364Transcriptomicsoligo Array;Commercial Array Plattform: The Human Genome Oligo-Set-Version 2.0 (Operon, Germany);
Pancreatic intraepithelial neoplasias (PanIN-3) / Normal pancreas ND (microdissected normal ductal cells)485
Buchloz M et al (Oct-05)485Transcriptomicsoligo Array;Commercial Array Plattform: The Human Genome Oligo-Set-Version 2.0 (Operon, Germany);
Pancreatic Juice from Chronic Pancreatitis / benign pancreatic diseases (benign cystic neoplasm)9
Chen R et al (Jan-07)9ProteomicsIsotope-code affinity tag (ICAT);Mass Spectrometry;LC MS/MS;
Pancreatic Juice from Pancreatic Adenocarcinomas (PDAC) / benign pancreatic diseases (benign cystic neoplasm) or patients undergoing evaluation of sphincter of oddi14
Chen R et al (May-06)14ProteomicsIsotope-code affinity tag (ICAT);Mass Spectrometry;LC MS/MS;
Pancreatic tumor central / peripheral (Xenograft from CL (orthotophic)) (microdissected)1079
Nakamura T et al (Aug-07)1079Transcriptomicsoligo Array;Commercial Array Plattform:U133 Plus 2.0 Affymetrix GeneChip;