Datasets in the Pancreatic Expression Database

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A set of highly relevant published pancreatic cancer papers was manually processed, data checked and results loaded into a relational database.

The data was annotated and integrated with the available Ensembl human genome annotations including gene related annotations, sequences, SNPs, gene structure, multi-species and antibody data from the human protein atlas.

We will be updating the database on a regular basis with new findings in the pancreatic cancer field. We also welcome and support pancreatic cancer scientists worldwide to deposit and share their data. If you have data that you would like to submit or any other enquiry, please email help@pancreasexpression.org.uk

Comparison Unique Gene Count Article Gene Count Technology Platform
Acinar / Ductal Pancreatic cancer (PC) cell line82Alhamdani MS et al (Jun-12) 82 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
Adenovirus sensitivity / insensitivity1359Gadaleta E et al (Jun-11) 1207 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Wang Y et al (Jun-09) 881 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
AGR2-expressing / vector controlled MiaPaCa-2 cell line31Dumartin L et al (Nov-11) 31 Proteomics 2D-DIGE;HPLC-ESI-MS/MS (Q-TOF-MS)
Ampullary adenocarcinoma / Normal duodenum203Van Heek NT et al (Jul-04) 203 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Antigen Immunogenicity in Pancreatic cancer (PDAC,AdSq) / Healthy Serum27Gnjatic S et al (Mar-10) 27 Proteomics ProtoArray Human Protein Microarrays v4.0 (Invitrogen)
AsPC-1 / 25 other Pancreatic cancer (PC) cell Line2871Gadaleta E et al (Jun-11) 2871 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
BxPC-3 / Human Pancreatic Ductal Epithelium (HPDE) cell line153Makawita S et al (Oct-11) 153 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Capan-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line232Makawita S et al (Oct-11) 232 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Central / peripheral Pancreatic tumour zone1177Nakamura T et al (Aug-07) 1177 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
CFPAC-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line225Makawita S et al (Oct-11) 225 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Chemotherapeutic agent sensitivity / resistance95Arumugam T et al (Jul-09) 95 Transcriptomics Illumina Human-6 v2.0 Expression Beadchip (Illumina)
Chronic pancreatitis (CP) / Healthy Blood72Bauer AS et al (Apr-12) 72 miRNA Geniom Biochip miRNA Homo Sapiens
Chronic pancreatitis (CP) / Healthy Urine18Weeks ME et al (Jul-08) 18 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Chronic pancreatitis (CP) / Normal pancreas (NP)1192Bauer AS et al (Apr-12) 42 miRNA Geniom Biochip miRNA Homo Sapiens
Chen R et al (Aug-07) 114 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Crnogorac-Jurcevic T et al (Nov-05) 23 Proteomics BD PowerBlot Western array (BD Biosciences)
Erkan M et al (Jun-05) 1 Transcriptomics qRT-PCR
Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Freiss H et al (Jun-03) 963 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Shen J et al (Dec-04) 36 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 62 miRNA mirVana miRNA Bioarrays (Ambion)
Chronic pancreatitis (CP) / Normal pancreatic duct (ND) adjacent to cancer22Bloomston M et al (May-07) 22 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Chronic pancreatitis (CP) / Normal pancreatic juice25Chen R et al (Jan-07) 12 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Matsubayashi H et al (Jan-15) 13 Methylomics Methylation-specific PCR (MSP)
Early / Late disease recurrence591Donahue TR et al (Mar-12) 511 Transcriptomics;miRNA GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Nakamura T et al (Mar-04) 80 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
EGFR inhibitor sensitive / resistant tumour1132Gadaleta E et al (Jun-11) 1110 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Jimeno A et al (Apr-08) 26 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Expression of genes associated with hypoxia-mediated apoptosis in Pancreatic cancer (PC)4Abe T et al (May-05) 4 Transcriptomics;Methylomics qRT-PCR
Expression of genes in Pancreatic cancer (PC)1Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics RT-PCR
Expression of genes in Pancreatic intraepithelial neoplasia (PanIN)1Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics Immunohistochemistry
Expression of genes in Pancreatic stromal cells1Kanno A et al (Jun-08) 1 Transcriptomics;Proteomics Immunohistochemistry
Familial Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreas (NP)80Crnogorac-Jurcevic T et al (Jan-13) 80 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Familial Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreas (NP)80Crnogorac-Jurcevic T et al (Jan-13) 80 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Functioning Pancreatic Endocrine Tumor (F-PET) / Non-functioning Pancreatic Endocrine Tumor (NF-PET)2Roldo C et al (Oct-06) 2 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Gemcitabine sensitivity / resistance14Akada M et al (Apr-05) 14 Transcriptomics Custom-made: Human 10K cDNA array v1.2.1 (Sanger Center UK)
Hh pathway antagonist treated / vehicle controlled tumour8Gadaleta E et al (Jun-11) 8 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
High / Less metastatic Pancreatic ductal adenocarcinoma (PDAC)71Mees ST et al (Aug-11) 71 miRNA Human miRNA Microarray v1.0 (Agilent)
Highly metastatic / parental SW1990 cell line31Shi W et al (Jan-11) 31 Proteomics SpringBio Antibody Microarray
Hsp 90 Inhibitor treated / untreated tumour2111Gadaleta E et al (Jun-11) 1970 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Song D et al (Oct-08) 185 Transcriptomics;Proteomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
HuPT4 / 25 other Pancreatic cancer (PC) cell Line2015Gadaleta E et al (Jun-11) 2015 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Hypoxic / Normoxic Pancreatic cancer (PC)1Abe T et al (May-05) 1 Transcriptomics;Methylomics qRT-PCR
Identification of Chronic pancreatitis (CP) juice proteome39Chen R et al (Jan-07) 39 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Identification of gastroduodenal fluid proteome50Paulo JA et al (Sep-10) 50 Proteomics GeLC-MS/MS (LTQ-FT-MS)
Identification of Healthy Plasma miRnome334Weber JA et al (Nov-10) 334 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Plasma proteome1129Anderson NL et al (Apr-04) 1129 Meta Analysis Reanalysis:LC/LC/LC-2DE-MS/MS (MALDI-TOF-MS and IT-MS);Reanalysis:LC/LC-MS/MS (IT-MS)
Identification of Healthy Saliva miRnome412Weber JA et al (Nov-10) 412 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Urine miRnome203Weber JA et al (Nov-10) 203 miRNA qPCR (Human miScript Assay 384 set v10.1)
Identification of Healthy Urine proteome1409Adachi J et al (Sep-06) 1409 Proteomics Nano LC-MS/MS/MS (LTQ-FT-MS and LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) and Human pancreatic ductal epithelium (HPDE) cell line secretome862Schiarea S et al (Sep-10) 862 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) and Lymph-node metastatis proteome234Naidoo K et al (Apr-12) 234 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) ascitic fluid proteome619Kosanam H et al (Dec-11) 619 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) Bile proteome493Farina A et al (Apr-11) 493 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) juice proteome1492Chen R et al (Jul-06) 50 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Gronborg M et al (Sep-Oct-04) 187 Proteomics Nano LC-MS/MS (Q-TOF-MS)
Makawita S et al (Oct-11) 1431 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Identification of Pancreatic ductal adenocarcinoma (PDAC) miRNome128Szafranska AE et al (Jun-07) 128 miRNA mirVana miRNA Bioarrays (Ambion)
Identification of Pancreatic ductal adenocarcinoma (PDAC) secretome165Zhang H et al (Jul-09) 165 Proteomics HPLC-ESI-MS/MS (Q-TOF-MS)
Identification of Pancreatic juice proteome148Chen R et al (Jan-07) 36 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Doyle CJ et al (Mar-12) 129 Proteomics LC-MS/MS (LTQ-IT-MS)
Identification of Pancreatic miRNome173Szafranska AE et al (Jun-07) 173 miRNA mirVana miRNA Bioarrays (Ambion)
Identification of Pancreatic proteome293Hu L et al (Feb-04) 293 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Intraductal papillary mucinous neoplasms (IPMN) / Chronic pancreatitis (CP) juice5Matsubayashi H et al (Jan-15) 5 Methylomics Quantitative methylation-specific PCR (QMSP)
Intraductal papillary mucinous neoplasms (IPMN) / Human pancreatic ductal epithelium (HPDE) cell line122Terris B et al (May-02) 122 Transcriptomics Custom-made: Human 5K1 cDNA microarray (Sanger Center UK)
Intraductal papillary mucinous neoplasms (IPMN) / Normal pancreatic duct (ND)578Sato N et al (Mar-04) 578 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Intraductal papillary mucinous neoplasms (IPMN) / Normal pancreatic juice12Matsubayashi H et al (Jan-15) 12 Methylomics Methylation-specific PCR (MSP)
Intraductal papillary mucinous neoplasms (IPMN) with / without invasive ductal adenocarcinoma (PDAC)280Sato N et al (Mar-04) 280 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Less-differentiated / Well-differentiated Pancreatic ductal adenocarcinoma (PDAC)5Zhang H et al (Jul-09) 5 Proteomics HPLC-ESI-MS/MS (Q-TOF-MS)
Long-term / Short-term survival15Bloomston M et al (May-07) 7 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Vimalachandran D et al (Apr-05) 1 Proteomics Immunohistochemistry
Winter C et al (May-12) 7 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Metastatic / Localized Pancreatic ductal adenocarcinoma (PDAC)6Stratford JK et al (Jul-10) 6 Transcriptomics Whole Human Genome Microarray 4x44K (Agilent)
Metastatic Pancreatic cancer (PC) / Normal pancreas (NP)9Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Metastatic Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP)1Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Methotrexate sensitivity / resistance1657Gadaleta E et al (Jun-11) 331 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Selga E et al (Sep-09) 1509 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Methylation of genes associated with hypoxia-mediated apoptosis in Pancreatic cancer (PC)1Abe T et al (May-05) 1 Transcriptomics;Methylomics Methylation-specific PCR (MSP)
MiaPaCa-2 / 25 other Pancreatic cancer (PC) cell Line1815Gadaleta E et al (Jun-11) 1815 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
MiaPaCa-2 / Human Pancreatic Ductal Epithelium (HPDE) cell line231Makawita S et al (Oct-11) 231 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
miRNA association with overall survival18Jamieson NB et al (Jan-12) 18 miRNA Human miRNA Microarray v2.0 (Agilent)
Mucinous cystic neoplasm (MCN) epithelium / Normal pancreatic ductal (ND) epithelium 30Fukushima N et al (Dec-04) 30 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Mucinous cystic neoplasm (MCN) ovarian-type stroma / Chronic pancreatitis (CP) fibrous stroma24Fukushima N et al (Dec-04) 24 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Non-benign pancreatic diseases / Normal pancreas (NP)1Dumartin L et al (Nov-11) 1 Proteomics Immunohistochemistry
Non-functioning Pancreatic Endocrine Tumor (NF-PET) / Normal Islet1395Capurso G et al (Jun-06) 1197 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Maitra A et al (Dec-03) 215 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Non-functioning Pancreatic Endocrine Tumor (NF-PET) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Normal pancreas (NP) adjacent to cancer / Normal pancreas (NP)3360Gadaleta E et al (Jun-11) 3359 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pogue-Geile KL et al (Dec-06) 1 Transcriptomics qRT-PCR (Applied Biosystems 7700 Sequence Detection Instrument with TaqMan)
Normal pancreas (NP) adjacent to cancer resembling ND / Normal pancreas (NP)1293Gadaleta E et al (Jun-11) 1293 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Normal pancreas (NP) adjacent to cancer resembling PDAC / Normal pancreas (NP)4119Gadaleta E et al (Jun-11) 4119 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Normal pancreatic duct (ND) / Normal pancreas (NP)1Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Normal pancreatic juice single / pooled12Chen R et al (Jul-06) 12 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Panc-1 / Human Pancreatic Ductal Epithelium (HPDE) cell line257Makawita S et al (Oct-11) 257 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Pancreatic Acinar cell carcinoma (PACC) / Normal pancreas (NP)28Roldo C et al (Oct-06) 28 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic cancer (PC) / Benign pancreatic disease Blood42Yu KH et al (Sep-Oct-05) 42 Proteomics 2D-DIGE;MALDI-MS/MS (MALDI-TOF-MS)
Pancreatic cancer (PC) / Healthy Saliva36Zhang L et al (Mar-10) 36 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pancreatic cancer (PC) / Human pancreatic ductal epithelium (HPDE) cell line1Akada M et al (Apr-05) 1 Transcriptomics qRT-PCR
Pancreatic cancer (PC) / Human umbilical endothelial (HUVEC) cell line164Alhamdani MS et al (Jun-12) 164 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
Pancreatic cancer (PC) / Normal pancreas (NP)10Akada M et al (Apr-05) 1 Transcriptomics qRT-PCR
Li J et al (Apr-05) 9 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Pancreatic cancer (PC) / Normal pancreas (NP) adjacent to cancer133Piepoli A et al (Mar-12) 133 miRNA GeneChip miRNA Array (Affymetrix)
Pancreatic cancer (PC) tissue and cell line / Normal pancreas (NP) and gastrointestinal mucosa126Iacobuzio-Donahue CA et al (Apr-02) 126 Transcriptomics GeneChip Human Genome U95 Set (Affymetrix)
Pancreatic cancer (PDAC,IPMN) / Normal pancreas (NP)18Lee EJ et al (Mar-07) 18 miRNA qPCR (TaqMan microRNA Assays)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP)1212Bauer AS et al (Apr-12) 106 miRNA Geniom Biochip miRNA Homo Sapiens
Bloomston M et al (May-07) 20 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Crnogorac-Jurcevic T et al (Nov-05) 73 Proteomics BD PowerBlot Western array (BD Biosciences)
Freiss H et al (Jun-03) 963 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Logsdon CD et al (May-03) 105 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics qRT-PCR
Shen J et al (Dec-04) 36 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 47 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP) juice5Matsubayashi H et al (Jan-15) 5 Methylomics Quantitative methylation-specific PCR (QMSP)
Pancreatic ductal adenocarcinoma (PDAC) / Chronic pancreatitis (CP) Urine18Weeks ME et al (Jul-08) 18 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Blood151Bauer AS et al (Apr-12) 151 miRNA Geniom Biochip miRNA Homo Sapiens
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Plasma10Kakisaka T et al (Jun-07) 10 Proteomics 2D-DIGE;LC-MS/MS (LTQ-IT-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Healthy Urine25Weeks ME et al (Jul-08) 25 Proteomics 2D-DIGE;MALDI-MS (MALDI-TOF-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Human pancreatic ductal epithelium (HPDE) cell line1532Mahon PC et al (Jul-07) 1 Proteomics Western blotting
Schiarea S et al (Sep-10) 124 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Thu KL et al (Jan-13) 1304 Methylomics;Transcriptomics Infinium 27k Human Methylation Beadchip (Illumina)
Zhang Y et al (Apr-09) 114 miRNA qRT-PCR (QuantiMir System)
Pancreatic ductal adenocarcinoma (PDAC) / Lymph-node metastasis127Naidoo K et al (Apr-12) 127 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP)5336Badea L et al (Nov-Dec-08) 259 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Bauer AS et al (Apr-12) 174 miRNA Geniom Biochip miRNA Homo Sapiens
Chen R et al (Oct-05) 92 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Crnogorac-Jurcevic T et al (Nov-05) 275 Proteomics BD PowerBlot Western array (BD Biosciences)
Erkan M et al (Jun-05) 1 Transcriptomics qRT-PCR
Esposito I et al (Jan-07) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Freiss H et al (Jun-03) 963 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Gadaleta E et al (Jun-11) 4055 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Grutzmann R et al (Jul-05) 623 Meta Analysis Reanalysis:GeneChip Human Full Length Array HuGeneFL (Affymetrix);Reanalysis:Custom Human 10K cDNA array v1.2.1 (Sanger Center UK);Reanalysis:Custom 45K cDNA microArray (Stanford)
Jamieson NB et al (Jan-12) 87 miRNA Human miRNA Microarray v2.0 (Agilent)
Logsdon CD et al (May-03) 105 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Mahon PC et al (Jul-07) 1 Proteomics Immunohistochemistry
Pei H et al (Sep-09) 65 Transcriptomics GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
Pogue-Geile KL et al (Dec-06) 113 Transcriptomics Custom-made: cDNA microarray from UniGene (243 sequence-verified Unigene clones between markers D4S2976 and D4S415)
Ramachandran V et al (Oct-08) 1 Transcriptomics;Proteomics qRT-PCR
Shen J et al (Dec-04) 38 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Szafranska AE et al (Jun-07) 78 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreas (NP) adjacent to cancer346Lu Z et al (Dec-04) 104 Proteomics 2D-PAGE;MALDI-MS (MALDI-TOF-MS)
Segara D et al (May-05) 43 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Tan ZJ et al (Apr-03) 56 Transcriptomics Commercial cDNA microarray (United Gene Technique)
Zhang G et al (Feb-12) 36 Transcriptomics GeneChip Human Gene 1.0 ST Array (Affymetrix)
Zhang Y et al (Apr-09) 114 miRNA qRT-PCR (QuantiMir System)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic duct (ND)961Buchholz M et al (Oct-05) 430 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Crnogorac-Jurcevic T et al (Jul-02) 17 Transcriptomics Human Cancer Atlas cDNA Expression Array (Clontech)
Erkan M et al (Jun-05) 1 Transcriptomics GeneChip Human Genome U95Av2 Array (Affymetrix)
Grutzmann R et al (Sep-Oct-04) 18 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Nakamura T et al (Mar-04) 525 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Vimalachandran D et al (Apr-05) 1 Proteomics Immunohistochemistry
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic duct (ND) adjacent to cancer27Bloomston M et al (May-07) 27 miRNA Custom-made: OSU_CCC version 3.0 (Ohio State University)
Pancreatic ductal adenocarcinoma (PDAC) / Normal pancreatic juice29Chen R et al (Jul-06) 16 Proteomics microcapillary HPLC-ESI-MS/MS (IT-MS)
Matsubayashi H et al (Jan-15) 13 Methylomics Methylation-specific PCR (MSP)
Pancreatic ductal adenocarcinoma (PDAC) and Liver metastasis / Normal liver (NL)31Barry S et al (Mar-13) 31 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) and Liver metastasis / Normal pancreas (NP)31Barry S et al (Mar-13) 31 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Chronic pancreatitis (CP) tissue98Szafranska AE et al (Jun-07) 98 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Normal pancreas (NP) tissue211Logsdon CD et al (May-03) 105 Transcriptomics GeneChip Human Full Length Array HuGeneFL (Affymetrix)
Szafranska AE et al (Jun-07) 106 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Normal pancreatic duct (ND), Normal pancreas (NP) and Human pancreatic ductal epithelium (HPDE) cell line1515Vincent A et al (May-11) 1515 Methylomics Human CpG Island ChIP-on-Chip Microarray 244K (Agilent)
Pancreatic ductal adenocarcinoma (PDAC) cell line / Pancreatic ductal adenocarcinoma (PDAC) tissue 85Szafranska AE et al (Jun-07) 85 miRNA mirVana miRNA Bioarrays (Ambion)
Pancreatic ductal adenocarcinoma (PDAC) cell line and xenorgaft / Normal pancreatic duct (ND) tissue and Human pancreatic ductal epithelium (HPDE) cell line522Jones S et al (Sep-08) 522 Transcriptomics Digital Gene Expression - Tag Profiling preparation kit (Illumina)
Pancreatic ductal adenocarcinoma (PDAC) Liver metastasis positive / negative151Nakamura T et al (Mar-04) 151 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Pancreatic ductal adenocarcinoma (PDAC) Lymph-node metastasis positive / negative65Nakamura T et al (Mar-04) 65 Transcriptomics Custom-made: Genome-wide cDNA microarray from UniGene 131 (Human Genome Center, Tokyo)
Pancreatic ductal adenocarcinoma (PDAC) stroma / Chronic pancreatitis (CP) stroma108Pilarsky C et al (Dec-08) 108 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic ductal adenocarcinoma (PDAC) stroma / Chronic pancreatitis (CP) stroma, Pancreatic ductal adenocarcinoma (PDAC) epithelia and Normal pancreas (NP) epithelia22Pilarsky C et al (Dec-08) 22 Transcriptomics Genechip Human Genome U133A Array (Affymetrix);Genechip Human Genome U133B Array (Affymetrix)
Pancreatic Endocrine Tumor (PET) / Normal pancreas (NP)80Roldo C et al (Oct-06) 80 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) / Pancreatic Acinar cell carcinoma (PACC) 10Roldo C et al (Oct-06) 10 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) with / without Liver metastasis1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic Endocrine Tumor (PET) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Pancreatic intraepithelial neoplasia (PanIN-1) / Normal pancreas (NP)1Pogue-Geile KL et al (Dec-06) 1 Transcriptomics Custom-made: cDNA microarray from UniGene (243 sequence-verified Unigene clones between markers D4S2976 and D4S415)
Pancreatic intraepithelial neoplasia (PanIN-1,2,3) / Normal pancreatic duct (ND) adjacent to PanIN62Yu J et al (Feb-12) 62 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-1B) / Normal pancreatic duct (ND)35Buchholz M et al (Oct-05) 35 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-1B,2) / Normal pancreatic duct (ND)165Prasad NB et al (Mar-05) 165 Transcriptomics Custom-made: cDNA microarray from IMAGE (over 15,000 cDNA clones from sequence-verified IMAGE clones)
Pancreatic intraepithelial neoplasia (PanIN-2) / Normal pancreatic duct (ND)321Buchholz M et al (Oct-05) 321 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreas (NP)1Pogue-Geile KL et al (Dec-06) 1 Transcriptomics qRT-PCR (Applied Biosystems 7700 Sequence Detection Instrument with TaqMan)
Pancreatic intraepithelial neoplasia (PanIN-2,3) / Normal pancreatic duct (ND) adjacent to PanIN and Pancreatic intraepithelial neoplasia (PanIN-1)10Yu J et al (Feb-12) 10 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND)432Buchholz M et al (Oct-05) 432 Transcriptomics Human Genome Oligo-Set-Version 2.0 (Operon)
Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND) adjacent to PanIN35Yu J et al (Feb-12) 35 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic intraepithelial neoplasia (PanIN-3) / Pancreatic intraepithelial neoplasia (PanIN-1,2)10Yu J et al (Feb-12) 10 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Pancreatic stellate cells / Pancreatic ductal adenocarcinoma (PDAC) cell line1Kanno A et al (Jun-08) 1 Transcriptomics;Proteomics qRT-PCR
Parenchyma adjacent to Chronic pancreatitis (CP) / Normal pancreas (NP) parenchyma40Fukushima N et al (Jun-05) 40 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Parenchyma adjacent to Pancreatic cancer (PC) / Normal pancreas (NP) parenchyma56Fukushima N et al (Jun-05) 56 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Parenchyma adjacent to Pancreatic cancer (PC) / Parenchyma adjacent to Chronic pancreatitis (CP) 18Fukushima N et al (Jun-05) 18 Transcriptomics Genechip Human Genome U133A Array (Affymetrix)
Post-Silencing and induction effect in Pancreatic intraepithelial neoplasia (PanIN-1,2,3) / Normal pancreatic duct (ND) adjacent to PanIN18Yu J et al (Feb-12) 18 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Post-Silencing and induction effect in Pancreatic intraepithelial neoplasia (PanIN-3) / Normal pancreatic duct (ND) adjacent to PanIN36Yu J et al (Feb-12) 36 miRNA TaqMan Array Human miRNA Cards A v2.1 (Applied Biosystems);TaqMan Array Human miRNA Cards B v3.0 (Applied Biosystems)
Primary / Metastatic Pancreatic cancer (PC)20Alhamdani MS et al (Jun-12) 0 Proteomics Custom-made: Antibody Microarray (810 antibodies targeting 741 cancer-related proteins)
McKinney KQ et al (Sept-Oct-12) 20 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
S100P gene-overexpressing / vector-controlled Panc-1 cell line21Whiteman HJ et al (Sep-07) 21 Proteomics 2D-DIGE;HPLC-ESI-MS/MS (Q-TOF-MS)
SU86.86 / Human Pancreatic Ductal Epithelium (HPDE) cell line231Makawita S et al (Oct-11) 231 Proteomics LC-MS/MS (LTQ-Orbitrap-MS)
Well-differentiated endocrine carcinoma (WDEC) / Pancreatic Acinar cell carcinoma (PACC) 4Roldo C et al (Oct-06) 4 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
Well-differentiated endocrine carcinoma (WDEC) with high (Ki67>2%) / low (Ki67<=2%) Proliferation index1Roldo C et al (Oct-06) 1 miRNA Custom-made: OSU_CCC version 2.0 (Ohio State University)
YPAC / 25 other Pancreatic cancer (PC) cell Line2239Gadaleta E et al (Jun-11) 2239 Meta Analysis Reanalysis:GeneChip Human Genome U133 Plus 2.0 Array (Affymetrix)
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